This is the main tutorial and help file for PlantIntronDB:
PlantIntronDB overview
PlantIntronDB is a comprehensive database that currently houses 100,126 introns hosting
functional elements. This includes 19,363 introns in Arabidopsis, 2,334 in cotton,
13,079 in maize, 31,370 in oilseed rape, and 33,980 in rice. All of these introns are
freely
available for download.
Search output
The descriptions of the database are as follows:
| Options | Example | Description |
|---|---|---|
| species | Arabidopsis | plant species |
| geneID | AT5G13140 | the gene that hosting introns with functional elements |
| intronNO | intron_1 | intron position |
| chr | 5 | chromosome number |
| strand | - | strand |
| start | 4171302 | intron start position |
| end | 4171554 | intron end position |
| width | 252 | intron width |
| sampleNumber | 198 | the number of sequencing samples from NCBI SRA |
Validated Intron RNA submission
Please feel free to send validated Intron RNAs to sunx1@sdau.edu.cn or johnsunx1@126.com. All new intron RNAs will be deposited into the database in 24 hours.
Who can use
Any users can freely access and use PlantIntronDB for academic or industrial purpose without registrations and charge.
Notes on the use of the PlantIntronDB
